AGGREGATE VARIABLES

AGGREGATE.py

VISUALIZE VITALS

Visualizing vital signs

TOADD: CL-AI-RVOYANCE EXPORT

GitHub - vanderschaarlab/clairvoyance: Clairvoyance: a Unified, End-to-End AutoML Pipeline for Medical Time Series

Data (copied from the README)

Clairvoyance expects your dataset files to be defined as follows:

• Four CSV files (may be compressed), as illustrated below:

  static_test_data.csv
  static_train_data.csv
  temporal_test_data.csv
  temporal_train_data.csv
  

• Static data file content format:

  id,my_feature,my_other_feature,my_third_feature_etc
  3wOSm2,11.00,4,-1.0
  82HJss,3.40,2,2.1
  iX3fiP,7.01,3,-0.4
  ...
  

• Temporal data file content format:

  id,time,variable,value
  3wOSm2,0.0,my_first_temporal_feature,0.45
  3wOSm2,0.5,my_first_temporal_feature,0.47
  3wOSm2,1.2,my_first_temporal_feature,0.49
  3wOSm2,0.0,my_second_temporal_feature,10.0
  3wOSm2,0.1,my_second_temporal_feature,12.4
  3wOSm2,0.3,my_second_temporal_feature,9.3
  82HJss,0.0,my_first_temporal_feature,0.22
  82HJss,1.0,my_first_temporal_feature,0.44
  ...
  

• The id column is required in the static data files. The id, time, variable, value columns are required in the temporal file. The IDs of samples must match between the static and temporal files.

WIP OMOP CDM FORMAT: Z_reprOMOPIZE.py

WIP: OMOP CDM v5.4 FORMAT